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Use ChocoGEN data?
Summary statistics
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Variants used in calculation
SNPs and risk alleles:
Distribution of PTS Worldwide
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PTS Distribution by Population
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Human population abbreviation key
1000 Genomes Global Population Groups
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AFR - African
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AMR - Admixed Americans
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EAS - East Asian
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EUR - European
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SAS - Southeast Asian
1000 Genomes Population codes
Code | Population | Group |
---|---|---|
ACB | African Caribbeans in Barbados | AFR |
ASW | Americans of African Ancestry in SW USA | AFR |
ESN | Esan in Nigeria | AFR |
GWD | Gambian in Western Divisions in the Gambia | AFR |
LWK | Luhya in Webuye Kenya | AFR |
MSL | Mende in Sierra Leone | AFR |
YRI | Yoruba in Ibadan Nigeria | AFR |
CHG | Colombians from Choco Colombia | AFR |
CLM | Colombians from Medellin Colombia | AMR |
MXL | Mexican Ancestry from Los Angeles USA | AMR |
PEL | Peruvians from Lima Peru | AMR |
PUR | Puerto Ricans from Puerto Rico | AMR |
CDX | Chinese Dai in Xishuangbanna China | EAS |
CHB | Han Chinese in Bejing China | EAS |
CHS | Southern Han Chinese | EAS |
JPT | Japanese in Tokyo Japan | EAS |
KHV | Kinh in Ho Chi Minh City Vietnam | EAS |
CEU | Utah Residents (CEPH) with Northern and Western European Ancestry | EUR |
FIN | Finnish in Finland | EUR |
GBR | British in England and Scotland | EUR |
IBS | Iberian Population in Spain | EUR |
TSI | Toscani in Italia | EUR |
BEB | Bengali from Bangladesh | SAS |
GIH | Gujarati Indian from Houston Texas | SAS |
ITU | Indian Telugu from the UK | SAS |
PJL | Punjabi from Lahore Pakistan | SAS |
STU | Sri Lankan Tamil from the UK | SAS |
PTS Distribution by Continental Group
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GADGET is intended as a tool for researchers to explore population-specific distributions of genetic variants that have been associated with a wide variety of human traits. Users of this site should treat the results with caution, as the interpretation PTS across populations can be complicated by a number of factors. We provide more detail on these issues on the Learn page and in our manuscript describing the server.
GADGET Explore Source Code: GitHub